xenith is a python package that uses pretrained models to re-score database search results for cross-linked peptides from cross-linking mass spectrometry (XL-MS) experiments.
The ppx package provides a simple means to access the ProteomeXchange repository from Python. Using ProteomeXchange identifiers, the user can retrieve metadata associated with a project and download project files from PRIDE.
[GitHub] [Docs] [PyPI]
The pydeck package makes it easy to create remark slide decks. This python package handles the boilerplate html needed to create remark slide decks and provides a live reload method for rapid iteration. pydeck is still in development [GitHub]